{
  "_id": "6ac368e6d743750d376db95f",
  "Package": "wallace",
  "Version": "2.2.1",
  "Date": "2026-05-05",
  "Title": "A Modular Platform for Reproducible Modeling of Species Niches\nand Distributions",
  "Description": "The 'shiny' application Wallace is a modular platform for\nreproducible modeling of species niches and distributions.\nWallace guides users through a complete analysis, from the\nacquisition of species occurrence and environmental data to\nvisualizing model predictions on an interactive map, thus\nbundling complex workflows into a single, streamlined\ninterface. An extensive vignette, which guides users through\nmost package functionality can be found on the package's GitHub\nPages website:\n<https://wallaceecomod.github.io/wallace/articles/tutorial-v2.html>.",
  "Authors@R": "c(person(\"Daniel F.\", \"Lopez-Lozano\", email = \"dlopezlozano@amnh.org\", role = \"aut\"),\nperson(\"Bethany A.\", \"Johnson\", email = \"bjohnso005@citymail.cuny.edu\", role = \"aut\"),\nperson(\"Jamie M.\", \"Kass\", email = \"jamie.m.kass@gmail.com\", role = \"aut\"),\nperson(\"Gonzalo E.\", \"Pinilla-Buitrago\", email = \"gepinillab@gmail.com\", role = \"aut\"),\nperson(\"Andrea\", \"Paz\", email = \"paz.andreita@gmail.com\", role = \"aut\"),\nperson(\"Valentina\", \"Grisales-Betancur\", email = \"vgrisale@eafit.edu.co\", role = \"aut\"),\nperson(\"Dean\", \"Attali\", email = \"daattali@gmail.com\", role = \"aut\"),\nperson(\"Matthew E.\", \"Aiello-Lammens\", email = \"matt.lammens@gmail.com\", role = \"aut\"),\nperson(\"Cory\", \"Merow\", email = \"corymerow@gmail.com\", role = \"aut\"),\nperson(\"Mary E.\", \"Blair\", email = \"mblair1@amnh.org\", role = c(\"aut\", \"cre\")),\nperson(\"Robert P.\", \"Anderson\", email = \"randerson@ccny.cuny.edu\", role = \"aut\"),\nperson(\"Sarah I.\", \"Meenan\", email = \"sarah.meenan@gmail.com\", role = \"ctb\"),\nperson(\"Olivier\", \"Broennimann\", email = \"olivier.broennimann@unil.ch\", role = \"ctb\"),\nperson(\"Peter J.\", \"Galante\", email = \"pgalante@amnh.org\", role = \"ctb\"),\nperson(\"Brian S.\", \"Maitner\", email = \"bmaitner@gmail.com\", role = \"ctb\"),\nperson(\"Hannah L.\", \"Owens\", email = \"hannah.owens@gmail.com\", role = \"ctb\"),\nperson(\"Sara\", \"Varela\", email = \"sara_varela@yahoo.com\", role = \"ctb\"),\nperson(\"Bruno\", \"Vilela\", email = \"bvilela@wustl.edu\", role = \"ctb\"),\nperson(\"Robert\", \"Muscarella\", email = \"bob.muscarella@gmail.com\", role = \"ctb\"))",
  "License": "GPL-3",
  "URL": "https://wallaceecomod.github.io/wallace/",
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  "Repository": "https://wallaceecomod.r-universe.dev",
  "Date/Publication": "2026-05-08 22:44:21 UTC",
  "RemoteUrl": "https://github.com/wallaceecomod/wallace",
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  "Author": "Daniel F. Lopez-Lozano [aut],\nBethany A. Johnson [aut],\nJamie M. Kass [aut],\nGonzalo E. Pinilla-Buitrago [aut],\nAndrea Paz [aut],\nValentina Grisales-Betancur [aut],\nDean Attali [aut],\nMatthew E. Aiello-Lammens [aut],\nCory Merow [aut],\nMary E. Blair [aut, cre],\nRobert P. Anderson [aut],\nSarah I. Meenan [ctb],\nOlivier Broennimann [ctb],\nPeter J. Galante [ctb],\nBrian S. Maitner [ctb],\nHannah L. Owens [ctb],\nSara Varela [ctb],\nBruno Vilela [ctb],\nRobert Muscarella [ctb]",
  "Maintainer": "Mary E. Blair <mblair1@amnh.org>",
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  "_exports": [
    "addDrawToolbar",
    "clearAll",
    "create_module",
    "ecoClimate_getdata",
    "ecoClimate_select",
    "ecospat.plot.nicheDEV",
    "editToolbarOptions",
    "envs_ecoClimate",
    "envs_userEnvs",
    "envs_worldclim",
    "espace_nicheOv",
    "espace_occDens",
    "espace_pca",
    "fmtSpN",
    "getRasterVals",
    "hlSpp",
    "model_bioclim",
    "model_maxent",
    "mxNonzeroCoefs",
    "occs_queryDb",
    "occs_userOccs",
    "part_partitionOccs",
    "penvs_bgExtent",
    "penvs_bgMask",
    "penvs_bgSample",
    "penvs_drawBgExtent",
    "penvs_userBgExtent",
    "poccs_removeByID",
    "poccs_selectOccs",
    "poccs_thinOccs",
    "polyZoom",
    "popUpContent",
    "predictMaxnet",
    "printVecAsis",
    "register_module",
    "remEnvsValsNA",
    "removeDrawToolbar",
    "reverseLabel",
    "run_wallace",
    "smartProgress",
    "spName",
    "spurious",
    "vis_bioclimPlot",
    "write_csv_robust",
    "writeLog",
    "xfer_area",
    "xfer_draw",
    "xfer_mess",
    "xfer_time",
    "xfer_userEnvs",
    "xfer_userExtent",
    "zoom2Occs"
  ],
  "_help": [
    {
      "page": "create_module",
      "title": "Create a Wallace module",
      "topics": [
        "create_module"
      ]
    },
    {
      "page": "ecoClimate_getdata",
      "title": "ecoClimate_getdata",
      "topics": [
        "ecoClimate_getdata"
      ]
    },
    {
      "page": "ecoClimate_select",
      "title": "ecoClimate_select",
      "topics": [
        "ecoClimate_select"
      ]
    },
    {
      "page": "envs_ecoClimate",
      "title": "envs_ecoClimate Obtain ecoClimate variables",
      "topics": [
        "envs_ecoClimate"
      ]
    },
    {
      "page": "envs_userEnvs",
      "title": "envs_userEnvs",
      "topics": [
        "envs_userEnvs"
      ]
    },
    {
      "page": "envs_worldclim",
      "title": "envs_worldclim Obtain WorldClim variables",
      "topics": [
        "envs_worldclim"
      ]
    },
    {
      "page": "espace_nicheOv",
      "title": "espace_nicheOv Niche Overlap",
      "topics": [
        "espace_nicheOv"
      ]
    },
    {
      "page": "espace_occDens",
      "title": "Occurrence density grid",
      "topics": [
        "espace_occDens"
      ]
    },
    {
      "page": "espace_pca",
      "title": "espace_pca Principal component analysis",
      "topics": [
        "espace_pca"
      ]
    },
    {
      "page": "model_bioclim",
      "title": "model_bioclim Generate Bioclim model",
      "topics": [
        "model_bioclim"
      ]
    },
    {
      "page": "model_maxent",
      "title": "model_maxent Generate maxent.jar or maxnet model",
      "topics": [
        "model_maxent"
      ]
    },
    {
      "page": "occs_queryDb",
      "title": "occs_queryDb Query online database for species occurrence records.",
      "topics": [
        "occs_queryDb"
      ]
    },
    {
      "page": "occs_userOccs",
      "title": "occs_userOccs Loads user provided occurrence records",
      "topics": [
        "occs_userOccs"
      ]
    },
    {
      "page": "part_partitionOccs",
      "title": "part_partitionOccs Partition occurrence data",
      "topics": [
        "part_partitionOccs"
      ]
    },
    {
      "page": "penvs_bgExtent",
      "title": "penvs_bgExtent Generate background extent",
      "topics": [
        "penvs_bgExtent"
      ]
    },
    {
      "page": "penvs_bgMask",
      "title": "penvs_bgMask Mask environmental data",
      "topics": [
        "penvs_bgMask"
      ]
    },
    {
      "page": "penvs_bgSample",
      "title": "penvs_bgSample Sample background points",
      "topics": [
        "penvs_bgSample"
      ]
    },
    {
      "page": "penvs_drawBgExtent",
      "title": "penvs_drawBgExtent: Draw background extent",
      "topics": [
        "penvs_drawBgExtent"
      ]
    },
    {
      "page": "penvs_userBgExtent",
      "title": "penvs_userBgExtent: user provided background extent",
      "topics": [
        "penvs_userBgExtent"
      ]
    },
    {
      "page": "poccs_removeByID",
      "title": "poccs_removeByID Remove occurrence by ID",
      "topics": [
        "poccs_removeByID"
      ]
    },
    {
      "page": "poccs_selectOccs",
      "title": "poccs_selectOccs Remove occurrences outside of polygon",
      "topics": [
        "poccs_selectOccs"
      ]
    },
    {
      "page": "poccs_thinOccs",
      "title": "poocs_thinOccs Thin occurrences",
      "topics": [
        "poccs_thinOccs"
      ]
    },
    {
      "page": "register_module",
      "title": "Register a Wallace module",
      "topics": [
        "register_module"
      ]
    },
    {
      "page": "run_wallace",
      "title": "Run _Wallace_ Application",
      "topics": [
        "run_wallace"
      ]
    },
    {
      "page": "vis_bioclimPlot",
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